PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0010s0960.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 219aa    MW: 23897.8 Da    PI: 5.2538
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0010s0960.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-183080155
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  SapurV1A.0010s0960.1.p 30 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 80
                            59*****998.**********9...336************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576127No hitNo description
SMARTSM003801.8E-353194IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-203190IPR016177DNA-binding domain
PfamPF008471.8E-113180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-303189IPR001471AP2/ERF domain
PROSITE profilePS5103221.8383188IPR001471AP2/ERF domain
PRINTSPR003675.0E-93243IPR001471AP2/ERF domain
CDDcd000181.73E-163490No hitNo description
PRINTSPR003675.0E-95470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVKNELKIHE SETSTPLQAS SASSSACKKK KYKGVRMRSW GSWVSEIRAP NQKTRIWLGS  60
YSTAEAAARA YDAALLCLKG SSANLNFPIS SSHYIPDSVM SPKSIQRAAA AAANTFADNP  120
TTPQVSSPPL PSSSSSSSSI LSSPSMVSSP SHQLDDYMSL MESFGTDIEP IPMLDSWYSF  180
DGLQYPKYLD QMFDGASFNP PMIDDFYETD IRLWSFAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-152889264ATERF1
2gcc_A3e-152889264ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559570.0EF155957.1 Populus trichocarpa RAP2-like protein (RAP2L16) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006386376.11e-106AP2 domain-containing transcription factor family protein
SwissprotQ9SFE43e-48ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA9PLA61e-106A9PLA6_POPTR; AP2 domain-containing transcription factor family protein
STRINGPOPTR_0002s08610.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47983156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-31ERF family protein